I assume you are looking specifically for actual RPG games made in RPG maker and unfortunately I can't think of any at the top of my head but personally I would still recommend other types of games made in RPG maker:
Some well known horror games like: IB, Mad Father, The Witch House, Misao, The Crooked Man, The Boogie Man, Hello? Hell..o?, Pocket Mirror, Stray Cat Crossing.
A really good story based game with some minor puzzle elements: To The Moon and it's sequels Finding Paradise and Imposter Factory
And my absolute recommendation is the puzzle / room escape visual novel: Your Turn To Die.
If you like games like Ace Attorney, Danganronpa and the Zero Escape trilogy: 999, Virtues Last Reward, Zero Time Dilemma then Your Turn To Die is an absolute must play IMO.
It is clearly inspired by those but I find it to be better in some aspects.