You have broken your save again somehow and Eve dropped back to 81% of her story. I don't know how this always happens, but it happens in vanilla game as well.
But don't fear, Naughty Tribute Mod lets you repair your saves yourself. Parameter LOAD_ERRORHANDLING does it for you. If you have it set to anything not equal to 0 it should at least warn you that something went wrong. Default setting is 1 and shows you:
View attachment 934831
This is what the parameter description shows you:
View attachment 934832
So to get rid of your problem, set this parameter to 2 and you are done without touching the save (you will get it again on next load but it will be fixed again), or to 3 to get rid of it for good after you save again and load that fresh save. If 3 does not work, try 4.
Set the parameter back to 1 afterwards. If you set it to 0 you will get what vanilla game does (load without warning, giving you an inconsistent state in this case).
Edit: you should use the most current version of the mod. I fixed a problem with your first save you attached earlier, where this repair mechanism made the game unresponsive because there were too many errors