Obvious ones are so obvious that I didn't even try to point on them. But yeah, problem is not that there are 1 or 2 copied features, but problem is in their quantity. Too many copied elements from a single game will make you look as a blatant plagiarist, even if you try to not be one.Edit: I was honestly expecting the more obvious comparisons I've seen floating around a few times, like the smiley face logo and Ikari looking similar to Rin. The latter of which is again, a fair point, as her design was actually inspired by Rin (god how you have dropped in my rankings girl...)
I'll read and enjoy your work even if it partially copied, but I really want it to be much better, cause it has good potential.
But yeah, you need more original characters, longer (and engaging, obviously, don't write just for word count!) events, and new, original plot twists, so you won't be compared to LiL (cause this comparison totally won't be in your favour, and you obviously wanna be respected and recognized by people for your own creation, and not for "meh copy of another one" ).