Actually, for specific problems like clothes with poke through or not adapting well to the shape, other tools you can look at are "fit Control", and "Mesh Grabber".
"Fit control" is general, can apply to any clothes, and gives you extra morphs - often works well, but does not always give as good a fit as it would be needed.
Mesh Grabber requires more time and more manual work, but can give a tight good fit, I am using it for some situations, like nipples that poke through with perky breast (with Fit Control, the entire dress area has to become bigger, being kind of "inflated", even when using just the "nipple adapt" morph), I also used sucessfully for situations like having different clothes, and parts of different outfits, that did not overlap correctly.
But in this picture you can see an example.
View attachment 1785374
Originally the belt was in part above, in part below, and in part inside both the hood and the yellow and black suit, and the hood itself was in part under the suit - the three were coming from different outfits and were not meant to be used together.
After the modifications, the suit, the belt and the hood are more in the order they are supposed to be, with the suit under, the hood above it, and the belt above both of them. It is not yet perfect, I improved it a bit the part between the hood and the suit after I made this image, but I am not trying to make it perfect
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I also managed to get the suit to be a bit more adherent, as well as the hood (originally, it was a few cm from the skin, despite being made of soft cloth.
Also, the hood had some unnatural waves/"bubbles" (not visible here), was not going down the right way with gravity, and trying to add a dforce modifier, aside the fact is not always as great as some suggest, was basically impossible because the hood is actually made up by various surfaces that intersect, which menas dForce "explosions".
Using mesh grabber, I managed to make those "bubbles" less inflated (thus more realisting as soft clothes going down with gravity).
Probably there is no single tool that can solve all your problems, but you can try mixing various.