Choices affects the story of MC. Of course your choices can't affects the entire game, Lara still remain, you can't kick her ass out of the story. Like the others character...What a stupid fucking game. You steer the MC away from certain decisions so the DEV ends up making you do it anyway without a choice. I mean what the fuck is the point of giving choices anyway, just make it a complete visual novel with no choices if the choices you make are not going to affect the direction the game and MC goes