I mean, i can really see it.
Potential future alliance between mutants, raiders and queen. Around MCs cock.
Queen gets secure routs and borders, and probably tool to to handle political opponents, she needs to be more lenient with outside allies. Her development in this acceptance and political power play to change dogmatic ways. Her faction defined feature is City, established secured society and order.
Kyra/raiders gets trade, secured bases, tech tools from mutants and support against rival bands, they need to be more civilized. Their development in learning to keep sick shit outside civilians and alliance. Their defined feature is in numbers, expansion, relative freedom and open mind
Yuna/mutants gets trade, secured bases, more freedom and admission into society. Their defined feature is talents, abilities, R&D and spec ops. They need developments allround. In deals with other factions, i guess. Conquering their spot.
All of this to collab against growing inhuman hive, cannibals and lunatics who completely rejecting humanity and civilisation. Even possible new apocalyptic dead end if player failed to assemble such alliance to strong enough and/or civilized enough for future society to prosper.
So much for main plot. Quite a field to clashes and development. Actually, endlessly, if needed to.
Buuut, i guess, we get more filler slaves/relatives to corrupt in bed more likely <_< Even horny jail as an adventure will not happen to MC.
Thanks again, for reading this walls of thoughts. Best wishes.