But... the main character has always supported Maria in this. What was apprehensive about Maria's reasons for finding her parents, but not about finding her parents. "Don't let who your parents were decide who you are. You're your own person." not "DON'T LOOK FOR YOUR PARENTS WTF?". Why shouldn't an orphan girl find her parents?
Android wasn't hostile in that event. She was being maliciously childish. Just having fun without thinking of the consequences. MC and Kali set her straight and she realized what she did.
I also have no idea where you're getiting "Over time the android becomes more distant and bored with being better than others." This has literally never happened and not something I'm attempting to write at all. She can be maliciously childish when she wants to have fun, especially relative to what we know because her limits aren't ours. It's Kali's and MC's job to correct Android's course.
Really? It would teach Maria a lesson to get enslaved for not listening to us? THAT is your better idea of a better story?
Yes, there could be other reasons I could write it. But personally, I'm not interested in making my story worse.