Well, all I can see right now is that you have three open villager quests. LeelaK stated that he added the possibility to finish side quests and villager quests from older chapters in this bugfix.
Are all dots for "Smithing Force, Emma" greened out or not right now?
I for myself for example missed some older quests for Veronica ("The Teacher's Pet, part 2-1, 2-2 & 2-3") - just like you by the way - and I was able to finish them now.
That's why I'm saying that you should look at those quests and see what is missing right now and try to finish them now if anyhow possible. Don't expect them to show up as finished due to the bugfix. That's not what LeelaK said. He said that he added the "possibility" to finish them now. So did you try to actually finish them now? That is the question. If not, well, then try.