Uploading right now, and as it's taking its sweet time, I'm gonna post the changelog now:
-Cloning isn't fixed. Sort of. The fix I had in place broke too many things and it is gonna take me a while to correct it. Thus, it simply wasn't acceptable. I do have a new fix in place, and while I haven't run into the bug, I don't think it will be consistent.
-Pony play is fixed. I was looking for a problem in all the right places, but was hunting bears when it was a mosquito.
-Biomancy explosion should be working. A fix for another issue was preventing it from firing. I managed to work around the other fix, but let me know if it's still an issue.
-Corruption bugs should be fixed. The mod bypasses a few things naturally, so it was easier than I expected. Some of the reported bugs were intended by Bedlam, so... while wierd, it's how they're programmed to occur.
-Unstable bugs. I don't have a full fix for that one yet. I have one in place, but it's a soft fix. It should work and should keep the bug from reoccurring, but I make no promises.
I think that's everything I worked, but as that list looks and feels short, I'm probably forgetting something.
EDIT: Providing I didn't just spend hours uploading the wrong file, it's ready for you all to try.
NOTE: If you click pony training, and no slavers show up to train you, MAKE SURE YOU ARE WEARING THE CORRECT ATTIRE, PONY GEAR. Will save us both a lot of time if I have to ask if you did this and you go "oh, ya, that fixed it". Not meant to sound aggressive (all caps does do that), just making sure people notice this part.
If your character disappears at any point after pony training, let me know. With as many details as possible.
I had this happen once so far and haven't been able to replicate it, so I do not know what caused it.