Yes, one could criticize that, but given that that has been the case from the start, it's totally fine to say, that it's just how the game is supposed to be. We have a very basic story about MC and the "fight of two gods" and a lot of girls to fuck and impregnate. Could be worse...
Once you've got so many characters it's basically impossible to make that world 100% coherent, which is totally fine to me. It's not like Tinkerer ever promised some kind of 100% coherent epic story in the first place.
As said above, if that's a total dealbreaker for some, they are probably playing the wrong game?