The issue was never the noses. Kylee ALWAYS had a pink nose (look at my previous post). The entire color scheme changed to use stronger colors. Her hair is darker, her skin is more pink, and yes, her nose and cheeks use a stronger shade of pink, hence you can notice it more.
Can we stop obsessing over the nose as if that was a specific decision made in the game's art? The "clown noses" are not intentional, they are a result of the change in collor pallette for the whole character. If you want to complain about something, complain about that.