I downloaded everything from the links on the first page, so I don't think I don't have the latest version of mods. Of the mods, only EmoSpy works as needed. AG is enabled, but does not work. I tried turning off the auto rating, but it didn't work either. I recently installed directx and visual c++ redistributable for another game. Could this have affected the operation of mods?Is your game crashing, or are the mods simply non-functional for you? I have the most recent updates and everything works smoothly for me. In either case I think the most common issue comes from mistakes in installing the game, maybe you misunderstood where exactly to install the mod files?
Are you 100% certain you have the newest updates for both the game and mods? I would highly suggest keeping the downloaded files around anyway even after install just for cases like these- maybe try a fresh re-install of the packages.
As far as I understood it (maybe someone can correct me on this) the save file for your progress hangs around somewhere in your C:/Users>Documents>TValle Games folder, so your progress shouldn't be impacted by reinstalling or updating the game itself, if that's what worries you.