Well this is the whole point, the plot now goes around the concil of 6 and the admin mastermind, Kirito already gave away in the maze that could be related to mind control and memory alteration.
For the goodees plan work "reshape and fix reality" they will need to mind control everyone and let them ready for this "new reality".
In the end Kirito will be the only one not affected and he will have a choice beteew the old reality where Asuna is a slave breeding pig machine or the new one where he probably going to forget everything about Asuna's actions but she will continue being Inoda sex slave behind his back.
Well, in the first case, it's good if Kirito finds out everything and just leaves, alone or with Suguha. I don't really like it if he stays to raise someone else's child. The second option is also not bad, but only if Kirito forgets everything at all. For example, there will be a scene when he sees a pregnant Asuna in depraved clothes with Inoda on the street and thinks "what a depraved woman" and moves on.
if Fujino never mentions Suguha in the corruption, what does this mean?, I mean, does Fujino have something in mind between Kirito and Suguha? I have a feeling that Fujino doesn't want Kirito to be left empty-handed even if he loses Asuna
Well, yes, as I say, as the person above wrote. In the first version, Kirito just leaves with Suguha. Well, or Suguha takes revenge somehow. And in the second, Suguha stays with Kirito, who has erased his memory of Asuna, Inoda and all the events.(He has known Suguha since childhood, so it makes sense.)
It can hardly be said that Fujino wants something good for Kirito. I think there will simply be a choice - to suffer or not to suffer, but having lost everything.(at least 4 years of life.)