what i have been playing this for the two to meet up and rejecting sex scenes with her in for that reason. will probably continue this way in hopes dev changes mind
I don't mind either way the story may go, whether the two hook up or not (I'm not an NTR fan, but I don't hate it either in VNs) doesn't matter to me. For now I'm mostly playing to allow the male MC to get away and be a good person, while also allowing the female MC to solve her case and turn the Company into something more humane (or destroy it, if that's not possible).
I have a strong feeling that all the choices are more comparable to Mass Effects' Paragon/Renegade decision making than about hooking up with people, and with two protagonist, we get to decide whether we end up with two Paragons, a Paragon and a Renegade, a Renegade and a Paragon, or two Renegades.
In the long run, that could result in a variety of good endings, bad endings and mixed endings. Especially the mixed endings will be interesting, since it'd involve the question which of the two survives.