These mods are "results oriented", they look at the script ahead of time and try to guide you towards the thing that produces better results long term.
In this case it's still unclear what kind of differences will come from punching or not, only Nyx knows right now, but i know the game takes notes of your choice here.
Tipically the non-violent option is the safer one, the one that should lead to better results.
Is it worth taking a choice that feels phony and leaves me feeling like a bitch?
For me the answer is NO.
Intertwined is about dealing with the consequences of your actions not simply staying safe, so i'll gladly deal with them here for a little satisfaction.