So I don't know exactly when it happend, but I can't seem to access Alice's punishment scenes anymore. When talking to her, i get no option for it, even when she messes up (i had to relevel obedience for her to show up at mass as well, even though she gave birth this update)
Once she has enough obedience, she'll again ask for punishment, but nothing happens after selecting discipline her, it's like the entire scene skips over and it immediately ends going to 'thank you high priest'. The mass scenes trigger just fine, I just think she's bugged somehow in my save, yet I don't have any far enough back for her to not be.