@Thatguy
Seems it overlaps with sorta console underneath (that blue thing one can see)... Strange.
You are using the version provided here in the OP or another one? It says v0.26, but who knows...
Can you set another resolution and check if it is shifted away? Reset it back and check.
Also can you switch to help menu or some other menu, for the windows to loose focus?
What I found on Patreon:
- if SSAA is activated you can no longer
click on 3D buttons (you can still click onto the 2D GUI buttons).
Can you deactive SSAA in another run lateron and check if the very same bug occurs? If no it's that.
Edit: As far as I could read there might have been one buggy v0.26 and a bugfixed / more stable build afterwards. Because they are patron-only builds there is no public changelog. I don't know what version is in the OP, maybe somebody does find a more 'recent' build. Try what I mentioned, especially deactivating Anti Aliasing. Hope that helps...