First.. Don't question my current "path"..
This is only one of my 11 playthroughs.
(possibly end up with more later. And this is why I love your Mod Sancho!)
However..
Sancho1969 not sure if you made a boo boo here.. but...
As seen in the screenshots, it's mentioned in the choice "tool tip" that it's +2 for Annie..
However... Annie is not there(and I don't know if it'll affect her later, as I'm in middle of playing RN.)
Alex gets a +2 at the choice of ganking this individual though.
I'm far from half way through my planned playthroughs, so dunno if there's any other "flukes" yet.
But so far, 3 of my "paths" up until start of chapter 6(plus this one), I've seen no other "boo boos"(or noticed at the least).