Well the v06 game and the 2 update are in the same folder (extracted). But when I lauch the game i'm still at the v0.9... like the V0.11 was'nt here..You should put all updates in the game folder, with replacement files if necessary.
The first way: from each archive, drag the files to the game folder. Where the executable file is located.
The second way: Drag the archive to the game folder where the executable file is located, then extract it. (Extract to current folder)