Tried the exe file you supplied, but the issue is still there.Just tested with both my version and the original, and it most definitely does happen on both of them.
It will appear only when you save and load the file for the first time. After you've encountered it, it will not show up again unless you start a new game.
It's a minor bug, but it's not a problem with the modded version I have provided—it's something for the dev to fix.
EDIT: Someone on the dev's Patreon has already made him known about this same bug—which he has acknowledged it was accidentally left like that for testing purposes—and has already corrected.
The fixed .exe (with the cheats) is attached.